Phylogenetics
Algorithms for building and analyzing evolutionary trees
12 algorithms in this category.
Distance Methods
Tree building from distance matrices
| Algorithm | Year | Purpose |
|---|---|---|
| FastTree | 2010 | 大规模序列集合的快速近似最大似然建树 |
| Neighbor-Joining | 1987 | 快速构建系统发育树 |
Character-Based Methods
Tree building from sequence characters
| Algorithm | Year | Purpose |
|---|---|---|
| IQ-TREE 2 | 2020 | 支持分区与混合模型的高效最大似然推断 |
| RAxML-NG | 2019 | 下一代高性能最大似然系统发育推断 |
| ASTRAL | 2018 | 基于基因树汇总的物种树估计 |
| RevBayes | 2016 | 灵活的贝叶斯系统发育推断平台 |
| IQ-TREE | 2015 | 快速最大似然系统发育推断 |
| Maximum Likelihood Phylogeny | 2014 | 统计学方法构建系统发育树 |
| BEAST2 | 2014 | 贝叶斯系统发育推断与系统动力学分析 |
| MrBayes | 2012 | 经典贝叶斯系统发育推断 |
| PhyML | 2003 | 快速最大似然系统发育推断 |
| Bayesian Phylogenetic Inference | 2001 | 贝叶斯框架的系统发育推断和分歧时间估计 |