标签索引¶
共 399 个标签。点击标签快速跳转。
fast31 classic18 deep-learning13 long-read12 rna-seq11 scalable11 bayesian9 annotation8 hmm8 language-model8 structure-prediction8 pangenome7 prokaryotic7 spatial7 structural-variant7 alignment6 differential-expression6 fastq6 maximum-likelihood6 pipeline6 quantification6 statistical6 chip-seq5 clustering5 de-novo5 gene-prediction5 haplotype5 methylation5 multiple-alignment5 reference-based5 selection5 versatile5 gwas4 integration4 lossless4 mcmc4 metagenome4 multi-modal4 peak-calling4 preprocessing4 probabilistic4 protein-design4 snp4 somatic4 variation-graph4 ab-initio3 batch-correction3 binning3 bioconductor3 classification3
fast¶
31 个算法
- ADMIXTURE (2009)
- BLAST (1990)
- Bowtie2 (2012)
- ColabFold (2022)
- DIAMOND (2015)
- DSRC (2013)
- ESMFold (2023)
- ESMFold (2023)
- Edlib (2017)
- FastTree (2010)
- Flye (2019)
- Foldseek (2023)
- Genrich (2019)
- Kalign (2005)
- Kallisto (2016)
- Kraken2 (2019)
- MMseqs2 (2017)
- Manta (2016)
- Minimap2 (2018)
- OmegaFold (2022)
- PhyML (2003)
- Prodigal (2010)
- Prodigal (2010)
- SPARK-X (2021)
- STAR (2013)
- Salmon (2017)
- Shasta (2020)
- Strelka2 (2018)
- Wtdbg2 (2019)
- eggNOG-mapper (2017)
- kallisto | bustools (2021)
classic¶
18 个算法
- BLAST (1990)
- BLAST-based Annotation (1990)
- GLIMMER (1998)
- GeneMark (1993)
- Glimmer (1998)
- LASTZ (2004)
- MODELLER (1993)
- MUSCLE (2004)
- MrBayes (2012)
- Needleman-Wunsch (1970)
- Neighbor-Joining (1987)
- Overlap-Layout-Consensus (OLC) (2010)
- PhyML (2003)
- Rosetta (2003)
- STRUCTURE (2000)
- Smith-Waterman (1981)
- TM-align (2005)
- Tajima's D (1989)
deep-learning¶
13 个算法
- AlphaFold (2021)
- AlphaFold3 (2024)
- Cellpose (2020)
- DeepSEA (2015)
- DeepSomatic (2024)
- DeepVariant (2018)
- ESMFold (2023)
- RoseTTAFold (2021)
- SignalP (2019)
- StarDist (2018)
- scANVI (2021)
- scVI (2018)
- scVI-tools (2023)
long-read¶
12 个算法
- Canu (2017)
- Clair3 (2022)
- DeepSomatic (2024)
- Flye (2019)
- GraphAligner (2019)
- Hifiasm (2021)
- Minimap2 (2018)
- Overlap-Layout-Consensus (OLC) (2010)
- Shasta (2020)
- Sniffles2 (2023)
- Wtdbg2 (2019)
- cuteSV (2020)
rna-seq¶
11 个算法
- BRAKER (2016)
- DESeq2 (2014)
- HISAT2 (2015)
- Kallisto (2016)
- NOISeq (2015)
- RSEM (2011)
- STAR (2013)
- Salmon (2017)
- Sleuth (2017)
- StringTie (2015)
- edgeR (2010)
scalable¶
11 个算法
- BOLT-LMM (2015)
- Clustal Omega (2011)
- FastTree (2010)
- IQ-TREE (2015)
- MAFFT (2002)
- MMseqs2 (2017)
- RAxML-NG (2019)
- REGENIE (2021)
- SPARK-X (2021)
- SPRING Compress (2020)
- Scanpy (2018)
bayesian¶
9 个算法
- BEAST2 (2014)
- BayeScan (2008)
- Bayesian Phylogenetic Inference (2001)
- Bracken (2017)
- FreeBayes (2012)
- MrBayes (2012)
- Octopus (2021)
- RevBayes (2016)
- STRUCTURE (2000)
annotation¶
8 个算法
- BLAST-based Annotation (1990)
- Bakta (2021)
- CellTypist (2022)
- ChromHMM (2012)
- KofamKOALA (2020)
- OrthoFinder (2019)
- Prokka (2014)
- scANVI (2021)
hmm¶
8 个算法
- AUGUSTUS (2005)
- ChromHMM (2012)
- GeneMark (1993)
- GeneMark-ES (2005)
- HMMER (2011)
- HMMRATAC (2019)
- RNAmmer (2007)
- TMHMM (2001)
language-model¶
8 个算法
- Ankh (2023)
- ESM-1v (2021)
- ESM-2 (2022)
- ESMFold (2023)
- ESMFold (2023)
- OmegaFold (2022)
- ProtBERT (2020)
- ProtTrans (2021)
structure-prediction¶
8 个算法
- AlphaFold (2021)
- AlphaFold3 (2024)
- Boltz-1 (2024)
- Chai-1 (2024)
- ESMFold (2023)
- OmegaFold (2022)
- OpenFold (2022)
- RoseTTAFold (2021)
pangenome¶
7 个算法
- Cactus (2011)
- HiFiBD (2022)
- Minigraph (2020)
- PanVC (2023)
- VG (Variation Graph) (2017)
- odgi (2020)
- seqwish (2020)
prokaryotic¶
7 个算法
- Bakta (2021)
- GLIMMER (1998)
- GeneMark-ES (2005)
- Glimmer (1998)
- Prodigal (2010)
- Prodigal (2010)
- Prokka (2014)
spatial¶
7 个算法
- Giotto Suite (2021)
- SPARK (2019)
- SPARK-X (2021)
- Seurat Spatial (2021)
- SpatialDE (2018)
- Squidpy (2021)
- stLearn (2021)
structural-variant¶
7 个算法
- Delly (2012)
- GRIDSS (2017)
- Manta (2016)
- Minigraph (2020)
- Sniffles2 (2023)
- SvABA (2016)
- cuteSV (2020)
alignment¶
6 个算法
differential-expression¶
6 个算法
fastq¶
6 个算法
maximum-likelihood¶
6 个算法
- ADMIXTURE (2009)
- IQ-TREE (2015)
- IQ-TREE 2 (2020)
- Maximum Likelihood Phylogeny (2014)
- PhyML (2003)
- RAxML-NG (2019)
pipeline¶
6 个算法
quantification¶
6 个算法
statistical¶
6 个算法
- DESeq2 (2014)
- DSS (2014)
- DiffBind (2011)
- Maximum Likelihood Phylogeny (2014)
- SPARK (2019)
- edgeR (2010)
chip-seq¶
5 个算法
clustering¶
5 个算法
de-novo¶
5 个算法
- De Bruijn Graph Assembly (2001)
- HOMER (2010)
- MaSuRCA (2013)
- Overlap-Layout-Consensus (OLC) (2010)
- RFdiffusion (2023)
gene-prediction¶
5 个算法
haplotype¶
5 个算法
methylation¶
5 个算法
multiple-alignment¶
5 个算法
reference-based¶
5 个算法