Edlib
基于 Myers 位并行算法的快速编辑距离计算工具，支持前缀、后缀和全长比对模式。该方法在计算编辑距离和比对方面速度极快，是序列相似度估计的高效选择。
| Property | Value |
|---|---|
| Purpose | 快速编辑距离和序列比对 |
| Time Complexity | O(mn / w) |
| Space Complexity | O(m) |
| Year | 2017 |
| Difficulty | Intermediate |
| Languages | C++ |
| Category | Sequence Alignment |
Complexity Analysis
- Time Complexity:
O(mn / w) - Space Complexity:
O(m)
Performance Insight: The time complexity of this algorithm is polynomial.
Note: Complexity analysis is based on theoretical models. Actual runtime is affected by input scale, hardware, and implementation optimizations. Benchmark for your specific workload.
Literature & Implementation
Related Tools
parasail · SeqAn · Biopython