Awesome Bioinformatics Algorithms

English

简体中文

English

简体中文

Appearance

Tags Index ​

fast ​

30 algorithms

classic ​

18 algorithms

deep-learning ​

13 algorithms

long-read ​

12 algorithms

rna-seq ​

11 algorithms

scalable ​

11 algorithms

bayesian ​

9 algorithms

annotation ​

8 algorithms

hmm ​

8 algorithms

language-model ​

8 algorithms

structure-prediction ​

8 algorithms

pangenome ​

7 algorithms

prokaryotic ​

7 algorithms

spatial ​

7 algorithms

structural-variant ​

7 algorithms

differential-expression ​

6 algorithms

fastq ​

6 algorithms

maximum-likelihood ​

6 algorithms

pipeline ​

6 algorithms

quantification ​

6 algorithms

alignment ​

5 algorithms

clustering ​

5 algorithms

gene-prediction ​

5 algorithms

haplotype ​

5 algorithms

multiple-alignment ​

5 algorithms

reference-based ​

5 algorithms

selection ​

5 algorithms

statistical ​

5 algorithms

versatile ​

5 algorithms

de-novo ​

4 algorithms

gwas ​

4 algorithms

integration ​

4 algorithms

lossless ​

4 algorithms

mcmc ​

4 algorithms

metagenome ​

4 algorithms

multi-modal ​

4 algorithms

preprocessing ​

4 algorithms

probabilistic ​

4 algorithms

protein-design ​

4 algorithms

snp ​

4 algorithms

somatic ​

4 algorithms

variation-graph ​

4 algorithms

ab-initio ​

3 algorithms

batch-correction ​

3 algorithms

binning ​

3 algorithms

classification ​

3 algorithms

comprehensive ​

3 algorithms

3 algorithms

domain-detection ​

3 algorithms

efficient ​

3 algorithms

eukaryotic ​

3 algorithms

gene-finding ​

3 algorithms

germline ​

3 algorithms

heuristic ​

3 algorithms

hifi ​

3 algorithms

high-ratio ​

3 algorithms

high-throughput ​

3 algorithms

hybrid ​

3 algorithms

indexing ​

3 algorithms

k-mer ​

3 algorithms

low-memory ​

3 algorithms

marker-gene ​

3 algorithms

methylation ​

3 algorithms

model-selection ​

3 algorithms

molecular-clock ​

3 algorithms

nanopore ​

3 algorithms

ont ​

3 algorithms

open-source ​

3 algorithms

orthology ​

3 algorithms

population-structure ​

3 algorithms

short-read ​

3 algorithms

single-cell ​

3 algorithms

single-sequence ​

3 algorithms

species-level ​

3 algorithms

splice-aware ​

3 algorithms

standard ​

3 algorithms

taxonomic ​

3 algorithms

tree-building ​

3 algorithms

umi ​

3 algorithms

adaptive ​

2 algorithms

ancestry ​

2 algorithms

archival ​

2 algorithms

assembly-based ​

2 algorithms

biobank ​

2 algorithms

bioconductor ​

2 algorithms

bisulfite-seq ​

2 algorithms

cancer ​

2 algorithms

clinical ​

2 algorithms

database ​

2 algorithms

diffusion ​

2 algorithms

dynamic-programming ​

2 algorithms

evidence-based ​

2 algorithms

expectation-maximization ​

2 algorithms

fm-index ​

2 algorithms

gene-family ​

2 algorithms

genotyping ​

2 algorithms

go-annotation ​

2 algorithms

graph-alignment ​

2 algorithms

graph-based ​

2 algorithms

histone ​

2 algorithms

kegg ​

2 algorithms

lightweight ​

2 algorithms

linear-model ​

2 algorithms

mags ​

2 algorithms

minimizer ​

2 algorithms

non-parametric ​

2 algorithms

outlier-detection ​

2 algorithms

pacbio ​

2 algorithms

pathway-analysis ​

2 algorithms

pca ​

2 algorithms

peak-calling ​

2 algorithms

prediction ​

2 algorithms

pretrained ​

2 algorithms

profiling ​

2 algorithms

progressive ​

2 algorithms

protein-family ​

2 algorithms

pseudoalignment ​

2 algorithms

random-access ​

2 algorithms

refinement ​

2 algorithms

representation-learning ​

2 algorithms

scaffolding ​

2 algorithms

segmentation ​

2 algorithms

self-training ​

2 algorithms

specialized-compression ​

2 algorithms

template-based ​

2 algorithms

transcript-level ​

2 algorithms

transcription-factor ​

2 algorithms

transfer-learning ​

2 algorithms

transformer ​

2 algorithms

ultra-fast ​

2 algorithms

ultrafast-bootstrap ​

2 algorithms

vae ​

2 algorithms

variant-calling ​

2 algorithms

variant-effect ​

2 algorithms

10x-genomics ​

1 algorithms

3Di ​

1 algorithms

abundance ​

1 algorithms

abundance-estimation ​

1 algorithms

accessible ​

1 algorithms

accurate ​

1 algorithms

alignment-to-graph ​

1 algorithms

amplicon ​

1 algorithms

annotation-pipeline ​

1 algorithms

approximate-likelihood ​

1 algorithms

assembly ​

1 algorithms

assembly-evaluation ​

1 algorithms

assembly-polishing ​

1 algorithms

association ​

1 algorithms

atac-seq ​

1 algorithms

attention ​

1 algorithms

automated ​

1 algorithms

bacterial ​

1 algorithms

bam ​

1 algorithms

bert ​

1 algorithms

beta-binomial ​

1 algorithms

biomolecular ​

1 algorithms

bit-parallel ​

1 algorithms

block-compression ​

1 algorithms

bootstrap ​

1 algorithms

breakend ​

1 algorithms

breakpoint ​

1 algorithms

breakthrough ​

1 algorithms

bwt ​

1 algorithms

cell-communication ​

1 algorithms

cell-detection ​

1 algorithms

cell-interaction ​

1 algorithms

cell-nuclei ​

1 algorithms

cell-type ​

1 algorithms

chip-seq ​

1 algorithms

chromatin ​

1 algorithms

chromatin-state ​

1 algorithms

chromosome-level ​

1 algorithms

circular ​

1 algorithms

clade-specific ​

1 algorithms

cnn ​

1 algorithms

coalescent ​

1 algorithms

coding-potential ​

1 algorithms

colab ​

1 algorithms

comparative-genomics ​

1 algorithms

comparative-modeling ​

1 algorithms

comparison ​

1 algorithms

compressed-index ​

1 algorithms

compressed-suffix-array ​

1 algorithms

conditional-generation ​

1 algorithms

context-modeling ​

1 algorithms

contig ​

1 algorithms

coverage ​

1 algorithms

cpg ​

1 algorithms

de-bruijn ​

1 algorithms

differential-analysis ​

1 algorithms

differentiation ​

1 algorithms

diffusion-model ​

1 algorithms

dimensionality-reduction ​

1 algorithms

distance-based ​

1 algorithms

divergence-time ​

1 algorithms

diversity ​

1 algorithms

dmr ​

1 algorithms

domain ​

1 algorithms

drug-discovery ​

1 algorithms

edit-distance ​

1 algorithms

embedding ​

1 algorithms

empirical-bayes ​

1 algorithms

encryption ​

1 algorithms

energy-function ​

1 algorithms

enhanced ​

1 algorithms

epigenetic ​

1 algorithms

error-correction ​

1 algorithms

exon-intron ​

1 algorithms

fft ​

1 algorithms

fld ​

1 algorithms

flexible ​

1 algorithms

fpkm ​

1 algorithms

fragment-assembly ​

1 algorithms

frugal ​

1 algorithms

fst ​

1 algorithms

functional ​

1 algorithms

functional-prediction ​

1 algorithms

functional-profiling ​

1 algorithms

fuzzy-bruijn ​

1 algorithms

gatk ​

1 algorithms

gaussian-process ​

1 algorithms

gene-families ​

1 algorithms

gene-regulatory ​

1 algorithms

gene-tree ​

1 algorithms

general-purpose ​

1 algorithms

generative ​

1 algorithms

genome-alignment ​

1 algorithms

genome-annotation ​

1 algorithms

genome-compression ​

1 algorithms

genome-finishing ​

1 algorithms

genomics ​

1 algorithms

germline-somatic ​

1 algorithms

ghmm ​

1 algorithms

glm ​

1 algorithms

global-alignment ​

1 algorithms

gpu-accelerated ​

1 algorithms

graph-analysis ​

1 algorithms

graph-assembly ​

1 algorithms

graph-construction ​

1 algorithms

graph-neural-network ​

1 algorithms

graph-operations ​

1 algorithms

grn ​

1 algorithms

guide-tree ​

1 algorithms

haplotype-aware ​

1 algorithms

high-accuracy ​

1 algorithms

high-similarity ​

1 algorithms

homology-modeling ​

1 algorithms

ihs ​

1 algorithms

image-analysis ​

1 algorithms

image-integration ​

1 algorithms

imaging ​

1 algorithms

imm ​

1 algorithms

import ​

1 algorithms

indel ​

1 algorithms

integrated ​

1 algorithms

interactive ​

1 algorithms

interpolated-markov-model ​

1 algorithms

inverse-folding ​

1 algorithms

iterative ​

1 algorithms

kraken ​

1 algorithms

ligand-receptor ​

1 algorithms

lightweight-mapping ​

1 algorithms

lmm ​

1 algorithms

local-adaptation ​

1 algorithms

local-alignment ​

1 algorithms

logistic-regression ​

1 algorithms

membrane-protein ​

1 algorithms

memory-efficient ​

1 algorithms

metabolic ​

1 algorithms

metropolis-coupled ​

1 algorithms

microbiome ​

1 algorithms

mixed-model ​

1 algorithms

mixture-model ​

1 algorithms

model-finder ​

1 algorithms

monte-carlo ​

1 algorithms

msa ​

1 algorithms

multi-database ​

1 algorithms

multi-format ​

1 algorithms

multi-kmer ​

1 algorithms

multi-platform ​

1 algorithms

multi-sample ​

1 algorithms

multi-species ​

1 algorithms

myers ​

1 algorithms

n50 ​

1 algorithms

negative-binomial ​

1 algorithms

network ​

1 algorithms

neutrality-test ​

1 algorithms

noiseq ​

1 algorithms

offset-correction ​

1 algorithms

open-chromatin ​

1 algorithms

open-weight ​

1 algorithms

overlap ​

1 algorithms

paired-end ​

1 algorithms

pairwise ​

1 algorithms

parallel ​

1 algorithms

partial-order ​

1 algorithms

partition ​

1 algorithms

pathogenicity ​

1 algorithms

pathway ​

1 algorithms

pattern-detection ​

1 algorithms

pfam ​

1 algorithms

phylodynamics ​

1 algorithms

polyploid ​

1 algorithms

population-differentiation ​

1 algorithms

population-genetics ​

1 algorithms

population-scale ​

1 algorithms

post-processing ​

1 algorithms

precision-weight ​

1 algorithms

probabilistic-programming ​

1 algorithms

profile-hmm ​

1 algorithms

protein-alignment ​

1 algorithms

protein-level ​

1 algorithms

pseudotime ​

1 algorithms

python ​

1 algorithms

pytorch ​

1 algorithms

qc ​

1 algorithms

quality ​

1 algorithms

quality-assessment ​

1 algorithms

quality-score ​

1 algorithms

rapid ​

1 algorithms

rare-variant ​

1 algorithms

reference-assisted ​

1 algorithms

reference-free ​

1 algorithms

reference-mapping ​

1 algorithms

regulatory-network ​

1 algorithms

remote-homology ​

1 algorithms

reordering ​

1 algorithms

repeat-graph ​

1 algorithms

resequencing ​

1 algorithms

ribosomal ​

1 algorithms

rmsd ​

1 algorithms

rna-seq-hints ​

1 algorithms

rrbs ​

1 algorithms

rrna ​

1 algorithms

run-length ​

1 algorithms

sam ​

1 algorithms

scverse ​

1 algorithms

1 algorithms

secretion ​

1 algorithms

seed-extend ​

1 algorithms

selective-alignment ​

1 algorithms

semi-hmm ​

1 algorithms

semi-supervised ​

1 algorithms

sensitive ​

1 algorithms

sequence-design ​

1 algorithms

sequence-embedding ​

1 algorithms

sequence-similarity ​

1 algorithms

short-read-first ​

1 algorithms

signal-peptide ​

1 algorithms

signaling ​

1 algorithms

simd ​

1 algorithms

simpleaf ​

1 algorithms

sorting ​

1 algorithms

spatially-variable-gene ​

1 algorithms

species-tree ​

1 algorithms

split-read ​

1 algorithms

standardized ​

1 algorithms

star-convex ​

1 algorithms

streaming ​

1 algorithms

structural-alignment ​

1 algorithms

structure-alignment ​

1 algorithms

structure-generation ​

1 algorithms

structure-refinement ​

1 algorithms

1 algorithms

summarization ​

1 algorithms

summary-method ​

1 algorithms

super-read ​

1 algorithms

surgery ​

1 algorithms

sv-detection ​

1 algorithms

t2t ​

1 algorithms

t5 ​

1 algorithms

t5-architecture ​

1 algorithms

telomere-to-telomere ​

1 algorithms

tetranucleotide ​

1 algorithms

threading ​

1 algorithms

three-track ​

1 algorithms

trainable ​

1 algorithms

trajectory ​

1 algorithms

trajectory-inference ​

1 algorithms

transcript-assembly ​

1 algorithms

transmembrane ​

1 algorithms

two-stage ​

1 algorithms

unbalanced ​

1 algorithms

universal ​

1 algorithms

variational-autoencoder ​

1 algorithms

vectorized ​

1 algorithms

visualization ​

1 algorithms

wavefront ​

1 algorithms

whole-genome ​

1 algorithms

wu-manber ​

1 algorithms

xp-ehh ​

1 algorithms

zero-shot ​

1 algorithms

Released under the MIT License.

Copyright © 2024–present Awesome Bioinfo Contributors