QUAST
基因组组装质量评估工具，计算 contig N50、scaffold N50、错配率和完整性等指标。该工具支持无参考和有参考的评估，是组装结果评价的标准工具。
| Property | Value |
|---|---|
| Purpose | 基因组组装质量的综合评估 |
| Time Complexity | O(n * r) |
| Space Complexity | O(n) |
| Year | 2013 |
| Difficulty | Beginner |
| Languages | Python |
| Category | Sequence Assembly |
Complexity Analysis
- Time Complexity:
O(n * r) - Space Complexity:
O(n)
Performance Insight: The time complexity of this algorithm is polynomial. Linear space can often be reduced by constant factors via sliding-window techniques.
Note: Complexity analysis is based on theoretical models. Actual runtime is affected by input scale, hardware, and implementation optimizations. Benchmark for your specific workload.
Literature & Implementation
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