DSRC
面向 FASTQ 文件的专用压缩算法，分别针对序列、质量值和标识符设计编码策略以提升压缩效率。 该方法兼顾压缩速度和压缩率，适合高通量测序中心对海量原始读段数据进行归档与传输。
| Property | Value |
|---|---|
| Purpose | FASTQ 数据的高速专用无损压缩 |
| Time Complexity | O(n) |
| Space Complexity | O(1) |
| Year | 2013 |
| Category | Data Compression |
Complexity Analysis
- Time Complexity:
O(n) - Space Complexity:
O(1)
Performance Insight: The time complexity of this algorithm is linear (O(n)), scales linearly to TB-scale data and is suitable for streaming pipelines. Space overhead is minimal, making it suitable for memory-constrained or streaming environments.
Note: Complexity analysis is based on theoretical models. Actual runtime is affected by input scale, hardware, and implementation optimizations. Benchmark for your specific workload.
Literature & Implementation
Related Tools
SPRING · Genozip · gzip