Kallisto
基于伪比对的转录本定量算法，使用 k-mer 索引实现超快速的表达量估计。 该方法无需完整比对即可准确估计转录本丰度，大幅提升了分析速度。
| Property | Value |
|---|---|
| Purpose | 快速转录本定量 |
| Time Complexity | O(n) |
| Space Complexity | O(t) |
| Year | 2016 |
| Category | Gene Expression Analysis |
Complexity Analysis
- Time Complexity:
O(n) - Space Complexity:
O(t)
Performance Insight: The time complexity of this algorithm is linear (O(n)), scales linearly to TB-scale data and is suitable for streaming pipelines.
Note: Complexity analysis is based on theoretical models. Actual runtime is affected by input scale, hardware, and implementation optimizations. Benchmark for your specific workload.
Literature & Implementation
Related Tools
Salmon · RSEM · Sleuth