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HUMAnN

宏基因组功能分析流水线,将测序读段映射到基因家族和代谢通路,量化微生物群落的功能潜力。 该方法整合了物种分类和功能注释,能同时提供群落水平和物种水平的功能组成。

PropertyValue
Purpose宏基因组功能组成和代谢通路分析
Time ComplexityO(n * d)
Space ComplexityO(d)
Year2014
CategoryMetagenomics

Complexity Analysis

  • Time Complexity: O(n * d)
  • Space Complexity: O(d)

Performance Insight: The time complexity of this algorithm is polynomial.

Note: Complexity analysis is based on theoretical models. Actual runtime is affected by input scale, hardware, and implementation optimizations. Benchmark for your specific workload.

Literature & Implementation

MetaPhlAn · KEGG · eggNOG-mapper

Tags

pathway-analysis gene-family functional pipeline

Released under the MIT License.