Data Pipeline

This page describes the complete data pipeline from raw YAML data to the final published site.

Pipeline Stages

Stage Details

Stage	Command	Failure behaviour
Field validation	python -m awesome_bioinfo validate	Exit code 1, blocks subsequent steps
Page generation	python -m awesome_bioinfo vitepress	Only runs after validation passes
Static build	cd docs && npm run build	TypeScript/Markdown errors abort build
Deployment	GitHub Actions auto-triggered	Skipped if build fails

Regeneration Workflow

After modifying data/, run in order:

python -m awesome_bioinfo validate   # ensure data is valid
python -m awesome_bioinfo vitepress  # regenerate docs
cd docs && npm run build             # verify clean build