References
Use this page as the bibliography for the public documentation set.
Papers
| Topic | Reference | Why it matters here |
|---|---|---|
| Assembly-based compression | Chandak et al., SPRING: a next-generation compressor for FASTQ files | Establishes the closest paper-level framing for ABC-style ordering and consensus work |
| Long-read comparison | Sahlin et al., NanoSpring: reference-free lossless compression of nanopore sequencing reads | Useful when explaining why fq-compressor is not optimized around nanopore-first assumptions |
Repositories
| Repository | Role in the reading path |
|---|---|
| shubhamchandak94/Spring | Closest external reference for the assembly-based compression framing |
| jkbonfield/fqzcomp | Compact quality-value compression reference |
| shubhamchandak94/HARC | Another FASTQ-specialized comparator |
| qm2/NanoSpring | Long-read comparison target |